Transcript: PAX8-AS1:1

Basic information

LNCipedia transcript ID: PAX8-AS1:1 
HGNC Gene Symbol: PAX8-AS1    
HGNC Full Gene Name: PAX8 antisense RNA 1
Ensembl Gene ID: ENSG00000189223
Ensembl Transcript ID: ENST00000456685
Location (hg38): chr2:113211522-113239690
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1207 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456685; ENST00000456685.1; AC016683.6-008; OTTHUMT00000330814.1; NONHSAT073753; ENST00000456685.5
Alternative gene names: ENSG00000189223; AC016683.6; ENSG00000189223.7; OTTHUMG00000153340.3; ENSG00000189223.9; PAX8-AS1; ENSG00000189223.13; ; ENSG00000189223.14


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.2955 non-coding 
CPAT coding probability 31.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAX8-AS1:1 yes no no no

Available literature

  1. Yu (2018), Baicalein inhibits breast cancer growth via activating a novel isoform of the long noncoding RNA PAX8-AS1-N., J. Cell. Biochem.
  2. Han (2016), Expression quantitative trait loci in long non-coding RNA PAX8-AS1 are associated with decreased risk of cervical cancer., Mol. Genet. Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PSD4-1:1
3.1 lnc-PSD4-1:1
4.0 PAX8-AS1:1
4.1 PAX8-AS1:1
5.0 PAX8-AS1:1
5.1 PAX8-AS1:1
5.2 PAX8-AS1:1