Transcript: PARTICL:3

Basic information

LNCipedia transcript ID: PARTICL:3 
HGNC Gene Symbol: PARTICL    
HGNC Full Gene Name: promoter of MAT2A antisense radiation-induced circulating long non-coding RNA
RefSeq ID: NR_038942
Location (hg38): chr2:85537467-85538886
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1420 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT072014; NR_038942; NR_038942.1
Alternative gene names: PARTICLE; PARTICL


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.4978 non-coding 
CPAT coding probability 23.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PARTICL:3 no no no no

Available literature

  1. O'Leary (2017), PARTICLE triplexes cluster in the tumor suppressor WWOX and may extend throughout the human genome., Sci Rep
  2. O'Leary (2015), PARTICLE, a Triplex-Forming Long ncRNA, Regulates Locus-Specific Methylation in Response to Low-Dose Irradiation., Cell Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GGCX-3:2
4.0 PARTICL:3
4.1 PARTICL:3
5.0 PARTICL:3
5.1 PARTICL:3
5.2 PARTICL:3