Transcript: PARTICL:2

Basic information

LNCipedia transcript ID: PARTICL:2 
LNCipedia gene ID: PARTICL
Location (hg38): chr2:85536388-85538977
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2452 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT072013
Alternative gene names: PARTICLE


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.9168 non-coding 
CPAT coding probability 22.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PARTICL:2 no no no no

Available literature

  1. O'Leary (2017), PARTICLE triplexes cluster in the tumor suppressor WWOX and may extend throughout the human genome., Sci Rep
  2. O'Leary (2015), PARTICLE, a Triplex-Forming Long ncRNA, Regulates Locus-Specific Methylation in Response to Low-Dose Irradiation., Cell Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GGCX-3:1
4.0 PARTICL:2
4.1 PARTICL:2
5.0 PARTICL:2
5.1 PARTICL:2
5.2 PARTICL:2