Transcript: PANTR1:46
Basic information
LNCipedia transcript ID: PANTR1:46
HGNC Gene Symbol: PANTR1
HGNC Full Gene Name:
POU3F3 adjacent non-coding transcript 1
Ensembl Gene ID:
ENSG00000233639
Ensembl Transcript ID:
ENST00000458253
Location (hg38): chr2:104807577-104851458
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 747 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003356; ENST00000458253.1; AC018730.1-001; OTTHUMT00000329327.1; NONHSAT072951; ENST00000458253.5
Alternative gene names: XLOC_002241; linc-MFSD9-15; ENSG00000233639.1; AC018730.1; OTTHUMG00000153065.1; LINC01158; ENSG00000233639.5; linc-Brn1a
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
Locus conservation? | ||||
---|---|---|---|---|
PANTR1:46 | no | no | no | no |
Available literature
- Li (2014), Increased levels of the long intergenic non-protein coding RNA POU3F3 promote DNA methylation in esophageal squamous cell carcinoma cells., Gastroenterology
- Sauvageau (2013), Multiple knockout mouse models reveal lincRNAs are required for life and brain development., Elife
- Lin (2011), RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders., PLoS ONE
LNCipedia transcript ID history
LNCipedia version | LNCipedia transcript ID |
---|---|
1.3 | lnc-TGFBRAP1-5:5 |
3.1 | lnc-TGFBRAP1-6:6 |
4.0 | LINC01158:11 |
4.1 | LINC01158:11 |
5.0 | LINC01158:11 |
5.1 | PANTR1:20 |
5.2 | PANTR1:46 |