Transcript: PANCR:5

Basic information

LNCipedia transcript ID: PANCR:5 
LNCipedia gene ID: PANCR
Location (hg38): chr4:110522963-110615824
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1495 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000250103.1|MICT00000269593.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -33.0462 non-coding 
CPAT coding probability 2.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PANCR:5 yes no no no

Available literature

  1. Gore-Panter (2016), PANCR, the PITX2 Adjacent Noncoding RNA, Is Expressed in Human Left Atria and Regulates PITX2c Expression., Circ Arrhythm Electrophysiol
  2. Sailer (2016), PITX2 and PANCR DNA methylation predicts overall survival in patients with head and neck squamous cell carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PANCR:5
5.0 PANCR:5
5.1 PANCR:5
5.2 PANCR:5