Transcript: PACRG-AS1:5

Basic information

LNCipedia transcript ID: PACRG-AS1:5 
LNCipedia gene ID: PACRG-AS1
Location (hg38): chr6:163309320-163313190
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 698 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_3312_chr6:163730351-163734222_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -146.4309 non-coding 
CPAT coding probability 29.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PACRG-AS1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL078585.1-11:4
4.0 PACRG-AS1:5
4.1 PACRG-AS1:5
5.0 PACRG-AS1:5
5.1 PACRG-AS1:5
5.2 PACRG-AS1:5