Transcript: PACRG-AS1:2

Basic information

LNCipedia transcript ID: PACRG-AS1:2 
LNCipedia gene ID: PACRG-AS1
RefSeq ID: NR_028390
Location (hg38): chr6:163309985-163324473
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2135 bp
Exons: 6
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT115955; NR_028390; NR_028390.1
Alternative gene names: ; PACRG-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.6628 non-coding 
CPAT coding probability 9.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PACRG-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL078585.1-11:1
4.0 PACRG-AS1:2
4.1 PACRG-AS1:2
5.0 PACRG-AS1:2
5.1 PACRG-AS1:2
5.2 PACRG-AS1:2