Transcript: PABPC5-AS1:2

Basic information

LNCipedia transcript ID: PABPC5-AS1:2 
LNCipedia gene ID: PABPC5-AS1
RefSeq ID: NR_110659
Location (hg38): chrX:91414903-91434999
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 401 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110659; NR_110659.1
Alternative gene names: OTTHUMG00000021960; PABPC5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -143.7553 non-coding 
CPAT coding probability 0.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PABPC5-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NAP1L3-2:2
4.0 PABPC5-AS1:2
4.1 PABPC5-AS1:2
5.0 PABPC5-AS1:2
5.1 PABPC5-AS1:2
5.2 PABPC5-AS1:2