Transcript: PABPC1L2B-AS1:2

Basic information

LNCipedia transcript ID: PABPC1L2B-AS1:2 
HGNC Gene Symbol: PABPC1L2B-AS1    
HGNC Full Gene Name: PABPC1L2B antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000226725
Ensembl Transcript ID: ENST00000416989
RefSeq ID: NR_110398
Location (hg38): chrX:72998388-73002856
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1167 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT137515; NR_110398; ENST00000416989.2; NR_110398.1
Alternative gene names: ENSG00000226725.2; RP11-493K23.1; PABPC1L2B-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.5585 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PABPC1L2B-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DMRTC1-1:2
4.0 PABPC1L2B-AS1:2
4.1 PABPC1L2B-AS1:2
5.0 PABPC1L2B-AS1:2
5.1 PABPC1L2B-AS1:2
5.2 PABPC1L2B-AS1:2