Transcript: OR2A1-AS1:18

Basic information

LNCipedia transcript ID: OR2A1-AS1:18 
LNCipedia gene ID: OR2A1-AS1
Location (hg38): chr7:144251662-144256244
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1268 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000498397; ENST00000498397.1; RP4-798C17.6-017; OTTHUMT00000349977.1; NONHSAT123911
Alternative gene names: ENSG00000170356; OR2A20P; ENSG00000244479.2; RP4-798C17.6; OTTHUMG00000158050.1; OR2A1-AS1; ENSG00000244479.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.8425 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
OR2A1-AS1:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NOBOX-1:17
3.1 lnc-ARHGEF35-1:17
4.0 OR2A1-AS1:18
4.1 OR2A1-AS1:18
5.0 OR2A1-AS1:18
5.1 OR2A1-AS1:18
5.2 OR2A1-AS1:18