Transcript: OR2A1-AS1:10

Basic information

LNCipedia transcript ID: OR2A1-AS1:10 
HGNC Gene Symbol: OR2A1-AS1    
HGNC Full Gene Name: OR2A1 antisense RNA 1
Ensembl Gene ID: ENSG00000244479
Ensembl Transcript ID: ENST00000468575
Location (hg38): chr7:144343242-144355401
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 568 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000468575; ENST00000468575.1; RP4-798C17.6-009; OTTHUMT00000350086.1; NONHSAT123924
Alternative gene names: ENSG00000244479; RP4-798C17.6; ENSG00000244479.2; OTTHUMG00000158050.1; OR2A1-AS1; ENSG00000244479.6; ; ENSG00000244479.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 48.3041 non-coding 
CPAT coding probability 1.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
OR2A1-AS1:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NOBOX-1:9
3.1 lnc-ARHGEF35-1:9
4.0 OR2A1-AS1:10
4.1 OR2A1-AS1:10
5.0 OR2A1-AS1:10
5.1 OR2A1-AS1:10
5.2 OR2A1-AS1:10