Transcript: OPCML-IT2:1

Basic information

LNCipedia transcript ID: OPCML-IT2:1 
HGNC Gene Symbol: OPCML-IT2    
HGNC Full Gene Name: OPCML intronic transcript 2
Ensembl Gene ID: ENSG00000255371
Ensembl Transcript ID: ENST00000533260
Location (hg38): chr11:132859245-132860077
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 398 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533260.1; OPCML-IT2-001; OTTHUMT00000393276.1; NONHSAT025199
Alternative gene names: ENSG00000255371.1; OPCML-IT2; OTTHUMG00000167116.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -228.3052 non-coding 
CPAT coding probability 1.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
OPCML-IT2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPATA19-3:1
4.0 OPCML-IT2:1
4.1 OPCML-IT2:1
5.0 OPCML-IT2:1
5.1 OPCML-IT2:1
5.2 OPCML-IT2:1