Transcript: NUTM2A-AS1:9

Basic information

LNCipedia transcript ID: NUTM2A-AS1:9 
LNCipedia gene ID: NUTM2A-AS1
RefSeq ID: NR_024397
Location (hg38): chr10:87238667-87342558
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 822 bp
Exons: 6
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_024397; NR_024397.1
Alternative gene names: ; NUTM2A-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.6677 non-coding 
CPAT coding probability 23.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NUTM2A-AS1:9 no no no no

Available literature

  1. Joo (2014), Role of Pnn in alternative splicing of a specific subset of lncRNAs of the corneal epithelium., Mol. Vis.
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GLUD1-4:14
4.0 NUTM2A-AS1:9
4.1 NUTM2A-AS1:9
5.0 NUTM2A-AS1:9
5.1 NUTM2A-AS1:9
5.2 NUTM2A-AS1:9