Transcript: NUP50-DT:43

Basic information

LNCipedia transcript ID: NUP50-DT:43 
LNCipedia gene ID: NUP50-DT
Location (hg38): chr22:45133829-45163781
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1267 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000426282; ENST00000426282.1; CTA-217C2.1-001; OTTHUMT00000321991.1
Alternative gene names: ENSG00000226328; CTA-217C2.1; ENSG00000226328.1; OTTHUMG00000151264.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 71.937 coding 
CPAT coding probability 4.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
NUP50-DT:43 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA0930-2:1
3.1 lnc-KIAA0930-2:1
4.0 NUP50-AS1:9
4.1 NUP50-AS1:9
5.0 NUP50-AS1:9
5.1 NUP50-DT:16
5.2 NUP50-DT:43