Transcript: NRIR:7

Basic information

LNCipedia transcript ID: NRIR:7 
LNCipedia gene ID: NRIR
Location (hg38): chr2:6829134-6830702
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1131 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004118; NONHSAT068919
Alternative gene names: XLOC_001966; linc-RNASEH1-12; lncRNA-CMPK2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.3026 non-coding 
CPAT coding probability 1.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NRIR:7 no no no no

Available literature

  1. Kambara (2014), Negative regulation of the interferon response by an interferon-induced long non-coding RNA., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMPK2-1:2
3.1 lnc-CMPK2-1:3
4.0 NRIR:7
4.1 NRIR:7
5.0 NRIR:7
5.1 NRIR:7
5.2 NRIR:7