Transcript: NRIR:4

Basic information

LNCipedia transcript ID: NRIR:4 
LNCipedia gene ID: NRIR
Location (hg38): chr2:6832003-6836133
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2954 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc002qyr_1
Alternative gene names: lncRNA-CMPK2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.7924 non-coding 
CPAT coding probability 2.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NRIR:4 no no no no

Available literature

  1. Kambara (2014), Negative regulation of the interferon response by an interferon-induced long non-coding RNA., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CMPK2-1:5
4.0 NRIR:4
4.1 NRIR:4
5.0 NRIR:4
5.1 NRIR:4
5.2 NRIR:4