Transcript: NPTN-IT1:2

Basic information

LNCipedia transcript ID: NPTN-IT1:2 
HGNC Gene Symbol: NPTN-IT1    
HGNC Full Gene Name: NPTN intronic transcript 1
Ensembl Gene ID: ENSG00000281183
Ensembl Transcript ID: ENST00000628401
Location (hg38): chr15:73567012-73569294
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2283 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000628401.1
Alternative gene names: ENSG00000281183.1; NPTN-IT1; lncRNA-LET


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -96.9701 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NPTN-IT1:2 yes no no no

Available literature

  1. Yang (2013), Repression of the long noncoding RNA-LET by histone deacetylase 3 contributes to hypoxia-mediated metastasis., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 NPTN-IT1:2
4.1 NPTN-IT1:2
5.0 NPTN-IT1:2
5.1 NPTN-IT1:2
5.2 NPTN-IT1:2