Transcript: NNT-AS1:11

Basic information

LNCipedia transcript ID: NNT-AS1:11 
LNCipedia gene ID: NNT-AS1
Location (hg38): chr5:43571321-43603954
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5892 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000248092.3|HBMT00001161883.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 14.5768 non-coding 
CPAT coding probability 80.31% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
NNT-AS1:11 no no no no

Available literature

  1. Hua (2017), Highly expressed long non-coding RNA NNT-AS1 promotes cell proliferation and invasion through Wnt/β-catenin signaling pathway in cervical cancer., Biomed. Pharmacother.
  2. Wang (2017), Upregulated NNT-AS1, a long noncoding RNA, contributes to proliferation and migration of colorectal cancer cells in vitro and in vivo., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 NNT-AS1:11
5.0 NNT-AS1:11
5.1 NNT-AS1:11
5.2 NNT-AS1:11