Transcript: NKAIN3-IT1:9

Basic information

LNCipedia transcript ID: NKAIN3-IT1:9 
LNCipedia gene ID: NKAIN3-IT1
Location (hg38): chr8:62981620-62984901
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3282 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT126910
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.898 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NKAIN3-IT1:9 yes no no no

Available literature

  1. Zhang (2015), Long Non-Coding RNAs Dysregulation and Function in Glioblastoma Stem Cells., Noncoding RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-32K4.2.1-6:2
4.0 lnc-RP11-32K4.2.1-6:2
4.1 lnc-RP11-32K4.2.1-6:2
5.0 lnc-RP11-32K4.2.1-6:2
5.1 NKAIN3-IT1:5
5.2 NKAIN3-IT1:9