Transcript: NKAIN3-IT1:6

Basic information

LNCipedia transcript ID: NKAIN3-IT1:6 
LNCipedia gene ID: NKAIN3-IT1
RefSeq ID: NR_027378
Location (hg38): chr8:62977861-62984901
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 7041 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT126909; NR_027378; NR_027378.1
Alternative gene names: UG0898H09


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.1302 non-coding 
CPAT coding probability 35.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NKAIN3-IT1:6 yes no no no

Available literature

  1. Zhang (2015), Long Non-Coding RNAs Dysregulation and Function in Glioblastoma Stem Cells., Noncoding RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-32K4.2.1-6:1
4.0 lnc-RP11-32K4.2.1-6:1
4.1 lnc-RP11-32K4.2.1-6:1
5.0 lnc-RP11-32K4.2.1-6:1
5.1 NKAIN3-IT1:2
5.2 NKAIN3-IT1:6