Transcript: NIPBL-DT:17

Basic information

LNCipedia transcript ID: NIPBL-DT:17 
LNCipedia gene ID: NIPBL-DT
Location (hg38): chr5:36865998-36876656
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1015 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000079532.1|FTMT21700037110.1
Alternative gene names: NIPBL-AS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -204.5626 non-coding 
CPAT coding probability 5.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NIPBL-DT:17 no no no no

Available literature

  1. Zuin (2017), Regulation of the cohesin-loading factor NIPBL: Role of the lncRNA NIPBL-AS1 and identification of a distal enhancer element., PLoS Genet.
  2. Velmeshev (2013), Expression of non-protein-coding antisense RNAs in genomic regions related to autism spectrum disorders., Mol Autism


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 NIPBL-AS1:7
5.0 NIPBL-AS1:7
5.1 NIPBL-DT:8
5.2 NIPBL-DT:17