Transcript: NIFK-AS1:12

Basic information

LNCipedia transcript ID: NIFK-AS1:12 
LNCipedia gene ID: NIFK-AS1
RefSeq ID: NR_037856
Location (hg38): chr2:121649989-121651538
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1267 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_037856; NR_037856.1
Alternative gene names: ; NIFK-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.7296 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NIFK-AS1:12 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSN-2:14
4.0 NIFK-AS1:12
4.1 NIFK-AS1:12
5.0 NIFK-AS1:12
5.1 NIFK-AS1:12
5.2 NIFK-AS1:12