Transcript: NEXN-AS1:1

Basic information

LNCipedia transcript ID: NEXN-AS1:1 
HGNC Gene Symbol: NEXN-AS1    
HGNC Full Gene Name: NEXN antisense RNA 1
Ensembl Gene ID: ENSG00000235927
Ensembl Transcript ID: ENST00000421331
RefSeq ID: NR_103535
Location (hg38): chr1:77881348-77889539
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2292 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000421331; ENST00000421331.1; NEXN-AS1-001; OTTHUMT00000097547.2; NONHSAT004050; NR_103535; NR_103535.1
Alternative gene names: ENSG00000235927; C1orf118; ENSG00000235927.1; NEXN-AS1; OTTHUMG00000040531.2; ENSG00000235927.2; ENSG00000235927.4; FLJ90637


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.0077 non-coding 
CPAT coding probability 98.30% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
NEXN-AS1:1 no no no no

Available literature

  1. Yuan (2016), A Novel Genetic Variant in Long Non-coding RNA Gene NEXN-AS1 is Associated with Risk of Lung Cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FUBP1-1:1
3.1 lnc-FUBP1-1:1
4.0 NEXN-AS1:1
4.1 NEXN-AS1:1
5.0 NEXN-AS1:1
5.1 NEXN-AS1:1
5.2 NEXN-AS1:1