Transcript: NEAT1:16

Basic information

LNCipedia transcript ID: NEAT1:16 
LNCipedia gene ID: NEAT1
Location (hg38): chr11:65425580-65426385
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 483 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000616315.1
Alternative gene names: ENSG00000245532.5; NEAT1; TncRNA; MENepsilon/beta; LINC00084; VINC; ENSG00000245532.6; ENSG00000245532.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -77.6143 non-coding 
CPAT coding probability 1.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NEAT1:16 no no no no

Available literature

  1. He (2016), Aberrant NEAT1 expression is associated with clinical outcome in high grade glioma patients., APMIS
  2. Hu (2016), The plasma lncRNA acting as fingerprint in non-small-cell lung cancer., Tumour Biol.
  3. Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
  4. Jin (2016), Detection of the long noncoding RNAs nuclear-enriched autosomal transcript 1 (NEAT1) and metastasis associated lung adenocarcinoma transcript 1 in the peripheral blood of HIV-1-infected patients., HIV Med.
  5. Lennox (2016), Cellular localization of long non-coding RNAs affects silencing by RNAi more than by antisense oligonucleotides., Nucleic Acids Res.
  6. Wilusz (2016), Long noncoding RNAs: Re-writing dogmas of RNA processing and stability., Biochim. Biophys. Acta
  7. Zhen (2016), Long noncoding RNA NEAT1 promotes glioma pathogenesis by regulating miR-449b-5p/c-Met axis., Tumour Biol.
  8. Barry (2015), Long Non-Coding RNA Expression during Aging in the Human Subependymal Zone., Front Neurol
  9. Bhattacharyya (2015), The Malat1 long non-coding RNA is upregulated by signalling through the PERK axis of unfolded protein response during flavivirus infection., Sci Rep
  10. Blume (2015), p53-dependent non-coding RNA networks in chronic lymphocytic leukemia., Leukemia


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 NEAT1:16
4.1 NEAT1:16
5.0 NEAT1:16
5.1 NEAT1:16
5.2 NEAT1:16

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