Transcript: NDST1-AS1:10

Basic information

LNCipedia transcript ID: NDST1-AS1:10 
HGNC Gene Symbol: NDST1-AS1    
HGNC Full Gene Name: NDST1 antisense RNA 1
Ensembl Gene ID: ENSG00000254333
Ensembl Transcript ID: ENST00000519040
Location (hg38): chr5:150475531-150485968
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 368 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519040; ENST00000519040.1; CTC-367J11.1-001; OTTHUMT00000374419.1; NONHSAT104562
Alternative gene names: ENSG00000254333; CTC-367J11.1; ENSG00000254333.1; OTTHUMG00000163588.1; NDST1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -202.1254 non-coding 
CPAT coding probability 1.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NDST1-AS1:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPS14-1:2
3.1 lnc-RPS14-1:2
4.0 lnc-RPS14-1:2
4.1 lnc-RPS14-1:2
5.0 lnc-RPS14-1:2
5.1 NDST1-AS1:5
5.2 NDST1-AS1:10