Transcript: NALT1:8

Basic information

LNCipedia transcript ID: NALT1:8 
HGNC Gene Symbol: NALT1    
HGNC Full Gene Name: NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1
Ensembl Gene ID: ENSG00000237886
Ensembl Transcript ID: ENST00000450304
Location (hg38): chr9:136549130-136549893
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 437 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000450304.1; RP11-611D20.2-002; OTTHUMT00000055085.1; NONHSAT135555
Alternative gene names: ENSG00000237886.1; RP11-611D20.2; OTTHUMG00000020933.1; NALT1; TCONS_l2_00029132


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.7002 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NALT1:8 no no no no

Available literature

  1. Wang (2015), LncRNA NALT interaction with NOTCH1 promoted cell proliferation in pediatric T cell acute lymphoblastic leukemia., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf163-2:2
4.0 NALT1:8
4.1 NALT1:8
5.0 NALT1:8
5.1 NALT1:8
5.2 NALT1:8