Transcript: NALT1:16

Basic information

LNCipedia transcript ID: NALT1:16 
LNCipedia gene ID: NALT1
Location (hg38): chr9:136546221-136558224
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 9638 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237886.1|MICT00000369273.1
Alternative gene names: TCONS_l2_00029132


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 16.4364 non-coding 
CPAT coding probability 45.72% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
NALT1:16 no no no no

Available literature

  1. Wang (2015), LncRNA NALT interaction with NOTCH1 promoted cell proliferation in pediatric T cell acute lymphoblastic leukemia., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 NALT1:16
5.0 NALT1:16
5.1 NALT1:16
5.2 NALT1:16