Transcript: MYCNUT:3

Basic information

LNCipedia transcript ID: MYCNUT:3 
LNCipedia gene ID: MYCNUT
Location (hg38): chr2:15921522-15936164
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 567 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004703; NONHSAT069303
Alternative gene names: XLOC_001364; linc-MYCN-1; lncUSMycN


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.2445 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MYCNUT:3 no no no no

Available literature

  1. Liu (2014), Effects of a novel long noncoding RNA, lncUSMycN, on N-Myc expression and neuroblastoma progression., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYCN-1:2
3.1 lnc-MYCN-1:2
4.0 MYCNUT:3
4.1 MYCNUT:3
5.0 MYCNUT:3
5.1 MYCNUT:3
5.2 MYCNUT:3