Transcript: MYCNOS:8

Basic information

LNCipedia transcript ID: MYCNOS:8 
LNCipedia gene ID: MYCNOS
Location (hg38): chr2:15920772-15922040
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 372 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT069301; FPKM1_group_15394_transcript_1
Alternative gene names: NCYM; N-CYM; MYCN-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -504.8282 non-coding 
CPAT coding probability 3.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MYCNOS:8 no no no no

Available literature

  1. Vadie (2015), MYCNOS functions as an antisense RNA regulating MYCN., RNA Biol
  2. Suenaga (2014), NCYM, a Cis-antisense gene of MYCN, encodes a de novo evolved protein that inhibits GSK3β resulting in the stabilization of MYCN in human neuroblastomas., PLoS Genet.
  3. Armstrong (1992), Isolation and characterization of complementary DNA for N-cym, a gene encoded by the DNA strand opposite to N-myc., Cell Growth Differ.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBAS-4:8
4.0 MYCNOS:8
4.1 MYCNOS:8
5.0 MYCNOS:8
5.1 MYCNOS:8
5.2 MYCNOS:8