Transcript: MSC-AS1:12

Basic information

LNCipedia transcript ID: MSC-AS1:12 
HGNC Gene Symbol: MSC-AS1    
HGNC Full Gene Name: MSC antisense RNA 1
Ensembl Gene ID: ENSG00000235531
Ensembl Transcript ID: ENST00000523133
Location (hg38): chr8:71970666-72002394
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 494 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT127207; ENST00000523133.1
Alternative gene names: ENSG00000235531.9; MSC-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.909 non-coding 
CPAT coding probability 1.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MSC-AS1:12 no no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep
  2. Dong (2014), Comparison of long noncoding RNA and mRNA expression profiles in mesenchymal stem cells derived from human periodontal ligament and bone marrow., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNB2-6:8
4.0 MSC-AS1:12
4.1 MSC-AS1:12
5.0 MSC-AS1:12
5.1 MSC-AS1:12
5.2 MSC-AS1:12