Transcript: MRPS30-DT:38

Basic information

LNCipedia transcript ID: MRPS30-DT:38 
LNCipedia gene ID: MRPS30-DT
Location (hg38): chr5:44777266-44844597
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5266 bp
Exons: 7
Sources: Nielsen et al.,2014
Alternative transcript names: l_2917_chr5:44777367-44844699_brain
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.362 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MRPS30-DT:38 yes no no no

Available literature

  1. Ghoussaini (2016), Evidence that the 5p12 Variant rs10941679 Confers Susceptibility to Estrogen-Receptor-Positive Breast Cancer through FGF10 and MRPS30 Regulation., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FGF10-3:9
4.0 lnc-FGF10-3:9
4.1 lnc-FGF10-3:9
5.0 lnc-FGF10-3:9
5.1 MRPS30-DT:2
5.2 MRPS30-DT:38