Transcript: MIR99AHG:7

Basic information

LNCipedia transcript ID: MIR99AHG:7 
HGNC Gene Symbol: MIR99AHG    
HGNC Full Gene Name: mir-99a-let-7c cluster host gene
Ensembl Gene ID: ENSG00000215386
Ensembl Transcript ID: ENST00000456342
Location (hg38): chr21:16071233-16607136
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 648 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456342; ENST00000456342.1; LINC00478-002; OTTHUMT00000158030.1; NONHSAT081223; ENST00000456342.5
Alternative gene names: ENSG00000215386; C21orf34; ENSG00000215386.5; LINC00478; OTTHUMG00000074377.1; ENSG00000215386.6; ENSG00000215386.10; MIR99AHG; MONC; ENSG00000215386.11; ENSG00000215386.12


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.6724 non-coding 
CPAT coding probability 2.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR99AHG:7 no no no no

Available literature

  1. Bailey (2015), Loss of estrogen-regulated microRNA expression increases HER2 signaling and is prognostic of poor outcome in luminal breast cancer., Cancer Res.
  2. Caudron-Herger (2015), Dissecting the nascent human transcriptome by analysing the RNA content of transcription factories., Nucleic Acids Res.
  3. Shih (2015), Non-Coding RNAs in Castration-Resistant Prostate Cancer: Regulation of Androgen Receptor Signaling and Cancer Metabolism., Int J Mol Sci
  4. Emmrich (2014), LincRNAs MONC and MIR100HG act as oncogenes in acute megakaryoblastic leukemia., Mol. Cancer
  5. Gardiner (2002), Annotation of human chromosome 21 for relevance to Down syndrome: gene structure and expression analysis., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP25-2:3
3.1 lnc-USP25-2:3
4.0 MIR99AHG:7
4.1 MIR99AHG:7
5.0 MIR99AHG:7
5.1 MIR99AHG:7
5.2 MIR99AHG:7