Transcript: MIR9-3HG:37

Basic information

LNCipedia transcript ID: MIR9-3HG:37 
LNCipedia gene ID: MIR9-3HG
RefSeq ID: NR_133002
Location (hg38): chr15:89362521-89398487
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4079 bp
Exons: 6
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_133002.1
Alternative gene names: MIR9-3HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 32.3199 non-coding 
CPAT coding probability 1.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR9-3HG:37 no no no no

Available literature

  1. Miano (2016), Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer., Oncotarget
  2. Konermann (2015), Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 MIR9-3HG:37
5.1 MIR9-3HG:37
5.2 MIR9-3HG:37