Transcript: MIR7-3HG:3

Basic information

LNCipedia transcript ID: MIR7-3HG:3 
HGNC Gene Symbol: MIR7-3HG    
HGNC Full Gene Name: MIR7-3 host gene
Ensembl Gene ID: ENSG00000176840
Ensembl Transcript ID: ENST00000317292
Location (hg38): chr19:4769140-4772533
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 710 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000317292; ENST00000317292.3; MIR7-3HG-001; OTTHUMT00000318990.1; ENST00000317292.7
Alternative gene names: ENSG00000176840; NCRNA00306; ENSG00000176840.6; MIR7-3HG; OTTHUMG00000150589.1; ENSG00000176840.7; ENSG00000176840.11; PGSF1; PGSF1a; PGSF1b; Huh7; uc002mbe.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.4899 non-coding 
CPAT coding probability 35.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR7-3HG:3 no no no no

Available literature

  1. Yang (2013), Induction of the liver cancer-down-regulated long noncoding RNA uc002mbe.2 mediates trichostatin-induced apoptosis of liver cancer cells., Biochem. Pharmacol.
  2. Tanaka (2002), Expression profile of active genes in the human pituitary gland., J. Mol. Endocrinol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FEM1A-1:2
3.1 lnc-FEM1A-1:2
4.0 MIR7-3HG:3
4.1 MIR7-3HG:3
5.0 MIR7-3HG:3
5.1 MIR7-3HG:3
5.2 MIR7-3HG:3