Transcript: MIR646HG:23

Basic information

LNCipedia transcript ID: MIR646HG:23 
LNCipedia gene ID: MIR646HG
Location (hg38): chr20:60630854-60653896
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3240 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000506383; NONHSAT080673
Alternative gene names: ENSG00000248220; AL161940.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.0843 non-coding 
CPAT coding probability 2.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR646HG:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf197-4:1
3.1 lnc-C20orf197-4:1
4.0 MIR646HG:23
4.1 MIR646HG:23
5.0 MIR646HG:23
5.1 MIR646HG:23
5.2 MIR646HG:23