Transcript: MIR600HG:4

Basic information

LNCipedia transcript ID: MIR600HG:4 
HGNC Gene Symbol: MIR600HG    
HGNC Full Gene Name: MIR600 host gene
Ensembl Gene ID: ENSG00000236901
Ensembl Transcript ID: ENST00000449175
RefSeq ID: NR_026677
Location (hg38): chr9:123109494-123115477
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5984 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000449175.1; MIR600HG-001; OTTHUMT00000053981.2; NONHSAT134613; NR_026677; NR_026677.1
Alternative gene names: ENSG00000236901.2; MIR600HG; OTTHUMG00000020635.2; ENSG00000236901.3; ENSG00000236901.4; GL012; FLJ22161; ENSG00000236901.5; ENSG00000236901.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.6895 non-coding 
CPAT coding probability 17.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR600HG:4 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STRBP-1:1
4.0 MIR600HG:4
4.1 MIR600HG:4
5.0 MIR600HG:4
5.1 MIR600HG:4
5.2 MIR600HG:4