Transcript: MIR4500HG:6

Basic information

LNCipedia transcript ID: MIR4500HG:6 
LNCipedia gene ID: MIR4500HG
Location (hg38): chr13:87443992-87670963
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1670 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000436290; ENST00000436290.1; MIR4500HG-001; OTTHUMT00000045413.1
Alternative gene names: ENSG00000228824; RP11-342C20.3; ENSG00000228824.1; MIR4500HG; OTTHUMG00000017166.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.0986 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR4500HG:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK6-9:4
3.1 lnc-SLITRK6-9:4
4.0 MIR4500HG:6
4.1 MIR4500HG:6
5.0 MIR4500HG:6
5.1 MIR4500HG:6
5.2 MIR4500HG:6