Transcript: MIR4500HG:10

Basic information

LNCipedia transcript ID: MIR4500HG:10 
LNCipedia gene ID: MIR4500HG
Location (hg38): chr13:87427214-87428273
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 510 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021677; ENST00000450888; ENST00000450888.1; LINC00438-001; OTTHUMT00000045412.1; NONHSAT034586
Alternative gene names: XLOC_010682; linc-SLITRK6-7; ENSG00000232636; RP11-342C20.2; ENSG00000232636.1; LINC00438; OTTHUMG00000017165.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -196.2656 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR4500HG:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK6-8:1
3.1 lnc-SLITRK6-8:1
4.0 MIR4500HG:10
4.1 MIR4500HG:10
5.0 MIR4500HG:10
5.1 MIR4500HG:10
5.2 MIR4500HG:10