Transcript: MIR4458HG:4

Basic information

LNCipedia transcript ID: MIR4458HG:4 
HGNC Gene Symbol: MIR4458HG    
HGNC Full Gene Name: MIR4458 host gene
Ensembl Gene ID: ENSG00000247516
Ensembl Transcript ID: ENST00000502001
Location (hg38): chr5:8457493-8460663
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1005 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502001; ENST00000502001.2; RP11-480D4.3-001; OTTHUMT00000365849.1
Alternative gene names: ENSG00000247516; RP11-480D4.3; ENSG00000247516.2; OTTHUMG00000161710.1; ENSG00000247516.3; MIR4458HG; ENSG00000247516.4; ; ENSG00000247516.5; ENSG00000247516.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -55.6727 non-coding 
CPAT coding probability 8.98% non-coding 
Bazzini small ORFs 1 coding 
orfFrame6.647025438
covF1Prop0.375
seqAAMAPMDIVSIVGAEKLEAMTMSTILSKKKQCLRNI

In stringent set: no

Locus conservation

Locus conservation?
MIR4458HG:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MTRR-3:1
3.1 lnc-MTRR-3:1
4.0 MIR4458HG:4
4.1 MIR4458HG:4
5.0 MIR4458HG:4
5.1 MIR4458HG:4
5.2 MIR4458HG:4