Transcript: MIR4435-2HG:18

Basic information

LNCipedia transcript ID: MIR4435-2HG:18 
HGNC Gene Symbol: MIR4435-2HG    
HGNC Full Gene Name: MIR4435-2 host gene
Ensembl Gene ID: ENSG00000172965
Ensembl Transcript ID: ENST00000442293
Location (hg38): chr2:111429323-111480261
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442293.1; AC068491.1-011; OTTHUMT00000332134.1; NONHSAT073649; ENST00000442293.5
Alternative gene names: ENSG00000172965.6; AC068491.1; OTTHUMG00000150313.6; ENSG00000172965.10; MIR4435-1HG; ENSG00000172965.14; MIR4435-2HG; LINC00978; AGD2; AK001796; lncRNA-AWPPH; ENSG00000172965.15


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.102 non-coding 
CPAT coding probability 5.16% non-coding 
Bazzini small ORFs 2 coding 
seqAAMSSQPGRRKSFFIWNNWEMKQEAL
orfFrame6.823837045
covF1Prop0.136363636
covF1Prop0.14
orfFrame7.182967268
seqAAMTDTENHDSSPSSTSTCCPPITAGMQLKDSLGPGSNCPLWTLRPLHLRVVCL

In stringent set: no

Locus conservation

Locus conservation?
MIR4435-2HG:18 no no no no

Available literature

  1. Kotzin (2016), The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan., Nature
  2. Yang (2015), A novel long noncoding RNA AK001796 acts as an oncogene and is involved in cell growth inhibition by resveratrol in lung cancer., Toxicol. Appl. Pharmacol.
  3. Kikuchi (2009), Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC108463.1-3:13
4.0 MIR4435-2HG:18
4.1 MIR4435-2HG:18
5.0 MIR4435-2HG:18
5.1 MIR4435-2HG:18
5.2 MIR4435-2HG:18