Transcript: MIR3945HG:1

Basic information

LNCipedia transcript ID: MIR3945HG:1 
HGNC Gene Symbol: MIR3945HG    
HGNC Full Gene Name: MIR3945 host gene
Ensembl Gene ID: ENSG00000251230
Ensembl Transcript ID: ENST00000511703
Location (hg38): chr4:184844585-184855751
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 729 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511703; ENST00000511703.1; RP11-701P16.5-001; OTTHUMT00000361376.1; NONHSAT099568; ENST00000511703.5
Alternative gene names: ENSG00000251230; RP11-701P16.5; ENSG00000251230.1; OTTHUMG00000160604.1; ENSG00000251230.5; MIR3945HG;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.5692 non-coding 
CPAT coding probability 3.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR3945HG:1 no no no no

Available literature

  1. Zhou (2015), A potential signature of eight long non-coding RNAs predicts survival in patients with non-small cell lung cancer., J Transl Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACSL1-1:1
3.1 lnc-ACSL1-1:1
4.0 MIR3945HG:1
4.1 MIR3945HG:1
5.0 MIR3945HG:1
5.1 MIR3945HG:1
5.2 MIR3945HG:1