Transcript: MIR1-1HG-AS1:32

Basic information

LNCipedia transcript ID: MIR1-1HG-AS1:32 
HGNC Gene Symbol: MIR1-1HG-AS1    
HGNC Full Gene Name: MIR1-1HG antisense RNA 1
Ensembl Gene ID: ENSG00000174403
Ensembl Transcript ID: ENST00000412495
Location (hg38): chr20:62544343-62551526
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2302 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412495.1; C20orf166-AS1-001; OTTHUMT00000109265.2; ENST00000412495.5
Alternative gene names: ENSG00000174403.11; C20orf166-AS1; OTTHUMG00000048002.2; ENSG00000174403.15; FLJ30313; MIR1-1HG-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.9398 non-coding 
CPAT coding probability 36.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR1-1HG-AS1:32 no no no no

Available literature

  1. Hu (2014), Identification of prostate cancer LncRNAs by RNA-Seq., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GATA5-2:1
4.0 C20orf166-AS1:5
4.1 C20orf166-AS1:5
5.0 C20orf166-AS1:5
5.1 MIR1-1HG-AS1:7
5.2 MIR1-1HG-AS1:32