Transcript: MIMT1:2

Basic information

LNCipedia transcript ID: MIMT1:2 
LNCipedia gene ID: MIMT1
RefSeq ID: NR_024059
Location (hg38): chr19:56840902-56848554
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1288 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000506016; TCONS_00026756; NR_024059; NR_024059.1
Alternative gene names: ENSG00000249567; XLOC_013173; linc-USP29-1; MIMT1; MIM1; NCRNA00067; LINC00067


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.3126 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIMT1:2 no no no no

Available literature

  1. Kobayashi (2014), Imprinting genes associated with endometriosis., EXCLI J
  2. Kim (2007), Genomic organization and imprinting of the Peg3 domain in bovine., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF71-3:2
3.1 lnc-ZNF71-3:2
4.0 MIMT1:2
4.1 MIMT1:2
5.0 MIMT1:2
5.1 MIMT1:2
5.2 MIMT1:2