Transcript: MEF2C-AS1:3

Basic information

LNCipedia transcript ID: MEF2C-AS1:3 
LNCipedia gene ID: MEF2C-AS1
Location (hg38): chr5:88883399-88943214
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 571 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000514794; ENST00000514794.1; CTC-454M9.1-005; OTTHUMT00000370005.1; NONHSAT102691; ENST00000514794.5
Alternative gene names: ENSG00000248309; CTC-454M9.1; ENSG00000248309.1; OTTHUMG00000162630.2; MEF2C-AS1; ENSG00000248309.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.5983 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MEF2C-AS1:3 yes no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POLR3G-5:2
3.1 lnc-RASA1-7:2
4.0 MEF2C-AS1:3
4.1 MEF2C-AS1:3
5.0 MEF2C-AS1:3
5.1 MEF2C-AS1:3
5.2 MEF2C-AS1:3