Transcript: MCF2L-AS1:3

Basic information

LNCipedia transcript ID: MCF2L-AS1:3 
LNCipedia gene ID: MCF2L-AS1
Location (hg38): chr13:112967509-112968824
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 687 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000446789.1; MCF2L-AS1-001; OTTHUMT00000127248.1
Alternative gene names: ENSG00000235280.1; MCF2L-AS1; OTTHUMG00000057130.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.4513 non-coding 
CPAT coding probability 69.49% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MCF2L-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PCID2-3:1
4.0 MCF2L-AS1:3
4.1 MCF2L-AS1:3
5.0 MCF2L-AS1:3
5.1 MCF2L-AS1:3
5.2 MCF2L-AS1:3