Transcript: MAP3K20-AS1:25

Basic information

LNCipedia transcript ID: MAP3K20-AS1:25 
LNCipedia gene ID: MAP3K20-AS1
Location (hg38): chr2:173271512-173282014
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 440 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00004500
Alternative gene names: XLOC_002398; linc-DLX2-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.0398 non-coding 
CPAT coding probability 0.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAP3K20-AS1:25 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SP3-2:1
3.1 lnc-SP3-3:2
4.0 MLK7-AS1:4
4.1 MLK7-AS1:4
5.0 MLK7-AS1:4
5.1 MAP3K20-AS1:12
5.2 MAP3K20-AS1:25