Transcript: MAP3K20-AS1:17

Basic information

LNCipedia transcript ID: MAP3K20-AS1:17 
LNCipedia gene ID: MAP3K20-AS1
Location (hg38): chr2:173187620-173282037
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 12438 bp
Exons: 8
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000238133.2|MICT00000203060.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 252.6914 coding 
CPAT coding probability 5.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MAP3K20-AS1:17 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MLK7-AS1:9
5.0 MLK7-AS1:9
5.1 MAP3K20-AS1:4
5.2 MAP3K20-AS1:17