Transcript: MAMDC2-AS1:8

Basic information

LNCipedia transcript ID: MAMDC2-AS1:8 
HGNC Gene Symbol: MAMDC2-AS1    
HGNC Full Gene Name: MAMDC2 antisense RNA 1
Ensembl Gene ID: ENSG00000204706
Ensembl Transcript ID: ENST00000451488
Location (hg38): chr9:70153134-70157540
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 317 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451488.1; RP11-195E11.3-001; OTTHUMT00000052596.1; NONHSAT131799
Alternative gene names: ENSG00000204706.6; RP11-195E11.3; OTTHUMG00000019987.2; ENSG00000204706.10; MAMDC2-AS1; ENSG00000204706.14;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.8824 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAMDC2-AS1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KLF9-1:5
4.0 MAMDC2-AS1:8
4.1 MAMDC2-AS1:8
5.0 MAMDC2-AS1:8
5.1 MAMDC2-AS1:8
5.2 MAMDC2-AS1:8