Transcript: MAMDC2-AS1:6

Basic information

LNCipedia transcript ID: MAMDC2-AS1:6 
LNCipedia gene ID: MAMDC2-AS1
Location (hg38): chr9:70169643-70172888
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1811 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000535188.1; RP11-195E11.3-201; NONHSAT131803
Alternative gene names: ENSG00000204706.6; RP11-195E11.3; OTTHUMG00000019987.2; ENSG00000204706.10; MAMDC2-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -211.4662 non-coding 
CPAT coding probability 19.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAMDC2-AS1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KLF9-1:3
4.0 MAMDC2-AS1:6
4.1 MAMDC2-AS1:6
5.0 MAMDC2-AS1:6
5.1 MAMDC2-AS1:6
5.2 MAMDC2-AS1:6