Transcript: MAMDC2-AS1:1

Basic information

LNCipedia transcript ID: MAMDC2-AS1:1 
LNCipedia gene ID: MAMDC2-AS1
Location (hg38): chr9:70169643-70175888
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1922 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000448377.2; RP11-195E11.3-003; OTTHUMT00000368127.1
Alternative gene names: ENSG00000204706.6; RP11-195E11.3; OTTHUMG00000019987.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -211.4662 non-coding 
CPAT coding probability 19.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAMDC2-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KLF9-1:1
4.0 MAMDC2-AS1:1
4.1 MAMDC2-AS1:1
5.0 MAMDC2-AS1:1
5.1 MAMDC2-AS1:1
5.2 MAMDC2-AS1:1